Topic list A-Z

Alphabetical list of the public HLRN webserver topics

Topic Summary
ABAQUS ABAQUS A Finite Element Analysis Package for Engineering Applications Table of Content General Information Functionality Conditions for Usage and...
Accounting HLRN Accounting Charge for System Usage This document has been adapted to HLRN IV Preamble HLRN provides computational resources primarily to scientific...
Accounting3 HLRN Accounting Charge for System Usage This document has been adapted to HLRN III Table of Content Preamble Summary Charge Model Definition...
Accounting4 HLRN Accounting Charge for System Usage This document has been adapted to HLRN IV Table of Content Preamble Summary Charge Model Definition...
AcknowledgeHLRN deutsch english How To Acknowledge HLRN Please acknowledge in your papers or presentations at a workshop or conference the funding by computing time at HLRN and...
AllineaDDT Allinea DDT The parallel debugger from Allinea Software Table of Content Introduction Preparing the environment Loading the Allinea Forge module...
Animation Animation Tools to build simple animated sequences from single pictures Table of Content 1 Installed tools 2. Installation at HLRN III 3. Examples...
ANSYS ANSYS A Package for Coupled Physics Simulations Table of Content General Information Functionality Conditions for Usage and Licensing at HLRN...
ApplicationHowTo deutsch english Wie werde ich Benutzer? Wie bekomme ich Rechenzeit? Beantragung und Verwaltung von Kennungen und Gro...
Aprun Running Programs with aprun This document describes some of the options for the application starter aprun . On this page: Overview Flow and execution...
ArpackNG Arpack ng Numerical library for solving large scale eigenvalue problems Table of Content General Information Arpack ng on HLRN Available Versions...
AustauschHPCZentren deutsch english Austausch mit anderen HPC Zentren Die folgenden Informationen ...
BatchInteractive Using the Batch System at HLRN Appendix: Interactive Batch Jobs This document has not yet been adapted to HLRN III Table of Content What is an Interactive...
BatchJobChains Batchsystem: Job Chains And Dependencies Table of Content General Remarks Basics of Job Chains Examples of Job Chains Lazy Person Approach ...
BatchJobIds Batch System at HLRN Appendix: Notes on Job IDs At HLRN III, up to three different services (Moab, Torque and ALPS) are responsible for a single job. Each of these...
BatchSystem Using the Batch System at HLRN III Hints and tips Table of Content Preface Technical Background Requesting Compute Resources Job Scripts Job...
BatchSystemWorkflowOptimisation Batch System: How to reduce your queueing times How to obtain better job turnaround times Table of Content In a nutshell Available compute resources ...
BerlinTDSBatchSystem Berlin TDS Batch System (Slurm) On this page: Berlin TDS Batch System (Slurm) The different partitions queues Job Scripts Examples for moab...
BuildingR32 Building R 3.1 3.3 The compilation involves a configuration step, compiling and testing. The default compiler environment must be unloaded before configure...
BuildingR34 Building R 3.4 All scripts need to be edited before using. Update the R version number! $ get R : downloading and unpacking. Get the required release and untar...
CDO-Operators The Climate Data Operators Table of Content General Information Usage of the CDO Tools at HLRN General Information Versions 1.6.2, 1.6....
CFX ANSYS CFX A Package for Computational Fluid Dynamics Simulations Table of Content General Information Functionality ANSYS CFX Conditions for Usage...
CompileSmp1 Compile the getm utils root `/sw/geo/getm/1.0/utils/src` builds `ncmerge gvc2zax nctransect` module load intel.studio/16.0.3.210 module load netcdf/4.4.1.1 intel...
CrayAccess Access and Environment Table of Content Login authentication by SSH keys Outbound Network Connections Gateway and data nodes for login at HLRN...
CrayBestPractices Best Practices, HowTos, Tutorials Examples, Hints, and Tips for utilizing the Cray XC30 Table of Content Utilizing the Cray system How to improve...
CrayBuildingPrograms Building programs for MPP Table of Content Build nodes Programming environment Compile and link MPI programs Static linking Dynamic linking...
CrayCrayCompiler Cray Compile Environment (Compiler) Table of Content Available Versions Usage Hints Further Reading Available Versions The Cray Compile Environment...
CrayDataHandling File Systems and Data Management Table of Content Storage Systems File System Quotas Home Directory $HOME File System Snapshots of $HOME Working...
CrayDocuOverview HLRN III User Documentation HLRN help: For questions, please contact the HLRN support crew support #64;hlrn.de. HLRN facilities and system overview HLRN...
CrayGnuCompiler GNU Compiler Collection Table of Content Available Versions Usage Hints Further Reading Available Versions Different versions of the GNU Compiler Collection...
CrayHardware The HLRN III Cray System Hardware and facilities overview Table of Content Hardware Configuration MPP system (Cray XC30 (MPP1) and Cray XC...
CrayIntelCompiler Intel Compilers The documentation on this page is for the Cray MPP system only! Documentation of Intel software available on HLRN pre /postprocessing nodes and...
CrayModulesUsage Software and Environment Table of Content Choose the target platform Show HLRN software lists Modules loaded at login Load a module Access...
CrayMPT MPT The Cray MPI Table of Content Available Versions Usage Hints Adjusting Rank Order Using DMAPP Setting Eager Limit Using Core...
CrayPerformanceAnalysis Performance Analysis on the Cray How well is your programm using the machine Table of Content What this is all about Basic Commands and Workflow Further...
CrayProgramming Building programs for MPP Build nodes The MPP component of the HLRN system, the Cray XC 30, consists of mom nodes and compute nodes. Batch scripts run on mom nodes...
CrayQuickstartGuide Quickstart Guide for the HLRN III System Konrad This is a quick start guide to help you to start your work on the HLRN supercomputer. HLRN HELP: For questions...
CraySoftware Software Packages, tools and libraries available on the HLRN III system Most of the software is provided through environment modules. Certain restrictions...
CraySoftwareMostRecent Latest Software Installations and Software Updates This page contains the full list. The top of the table is included in the Cray Software topic. Most recently...
CraySystem HLRN III User Documentation HLRN help: For questions, please contact the HLRN support crew support #64;hlrn.de. HLRN facilities and system overview HLRN...
CrayTds The HLRN Test and Development System The is the documentation for the Berlin Test and Development System (TDS). Table of Content The HLRN Test and Development...
CrayUsingPhase2 Making good use of HLRN III Phase 2 Efficient use of the new phase 2 resources Table of Content Most important differences between phase 1 and phase 2 hardware...
CrayWorkingExamples Cray Working Examples Examples, Hints, and Tips for Software installation on the Cray XC30 Table of Content ENZO Code Python szlib, udunits...
DocumentationOverview Software Documentation Overview Table of Content Accessing the online documentation Documentation for ISV software Restricted access: password...
ElPA ELPA Eigenvalue SoLvers for Petaflop Applications Table of Content General Information ELPA on HLRN Available Versions Compile and run ELPA...
EMailPolicy EMail Policy at HLRN Policy for Email to Addresses in the hlrn.de Domain Table of Content Foreword Email Policy at HLRN Email Address Validity...
ErrorReport Report A Problem Use this form to report problems and errors to HLRN Support You can greatly speed up the process of isolating and correcting errors you encounter...
FAQ Frequently Asked Questions (FAQ) FAQs covered in this topic: Old MPI binary from HLRN III phase 1 fails to run (HLRN III phase 2) Do binaries...
Ferret Ferret An interactive visualization and analysis environment for analyzing large data sets in geophysical context Table of Content General Information ...
FerretBalticexample Examples to use Baltic Sea related data stes and scripts Here we fake high quality data from coarse resolution data: bdata1 ferret yes? use coads climatology...
FLUENT FLUENT A Package for Computational Fluid Dynamics Simulations Table of Content General Information Functionality FLUENT Conditions for Usage...
GccBuilds cdo builds with gcc module swap sw.mpp1 sw.smp1 module unload PrgEnv cray module swap craype ivybridge craype sandybridge module load gcc/4.8.1.hlrn export PREFIX...
GetmUtils The getm utils Documentation and short description to get help, every binary may be called with ? option Usage module load getmutils sets the path...
Grace GRACE Grace is a WYSIWYG tool to make two dimensional plots of scientific data. Table of Content General Information Usage of the Grace at HLRN Binaries...
GraDS An interactive desktop tool for easy access, manipulation, and visualization of earth science data Table of Content General information 1. Documentation...
Graphics Graphical Environment For graphical postprocessing, the interactive HLRN nodes, login and data nodes, are available on the HLRN, see Gateway and data nodes for login...
GRIB_API The GRIB API The GRIB API The ECMWF GRIB API is an application program interface accessible from C, FORTRAN and Python programs developed for encoding and decoding...
GROMACS GROMACS A versatile package for molecular dynamics simulations Table of Content General information Access and Availability Using GROMACS at HLRN...
GSL GSL The Gnu Scientific Library Table of Content General Information Usage of GSL at HLRN Getting started with an example Building the...
HDF5 The HDF5 Library The Hierarchical Data Format Release 5 Table of Content General Information HDF5 on the Cray (MPP system) HDF5 on the SMP...
HintsAndTipsForPhase2 Hints And Tips For Programming the MPP Phase 2 Getting Ready for Upgraded HLRN III This document is adopted from `Getting Ready for Upgraded Sisu` written by...
HLRN4News Status of the HLRN Table of Content Current system status E mail news, overview Schedule for HLRN IV installation Dates for complex ...
HlrnSupport HLRN Support and Consultancy How to check system status, determine problems, and get support Table of Content HLRN Support Organisation System...
IntelBuilds Table of Content Up to version 1.8.2 Version 1.9.0 and later cdo build with INTEL compilers Up to version 1.8.2 module swap sw.mpp1 sw.smp1 module unload...
KNLWorkshop2016 Workshop `Code Optimization for Next Generation Intel Processors` Speedup Your Code on Next Generation Intel...
ModulesUsage Environment Modules Usage of environment Modules and their initialisation in interactive sessions and batch jobs at HLRN. Table of Content Introduction and...
NcoTools The NetCdf Operators Table of Content General Information Binaries Usage of the NCO tools at HLRN General Information Versions 4.3.8...
NcView NCVIEW General Information Ncview is a visual browser for netCDF format files. Latest and default version 2.1.7 Vendor...
NetCDF The NetCDF Library Network Common Data Form Table of Content General Information NetCDF on the Cray (MPP system) NetCDF on the SMP system...
OpenFOAM OpenFOAM The Open Source CFD Toolbox Table of Content General Information Available Versions OpenFOAM 2.2.x Interactive usage of OpenFOAM...
PackageInstallationTips Package Installation Tips HLRN provides the installation instructions for various packages, tools, and programs as installed on the HLRN system Table of Content...
ParProgWorkshop2017 Parallel Programming Workshop 2017 Speedup Your Code on Next Generation Intel...
PoliciesAndRegulations Policies and Regulations Datenschutz Erkl...
PROJ PROJ.4 PROJ.4 Cartographic Projections Library Table of Content General Information Usage of PROJ at HLRN General Information Version...
Projects deutsch english Current Projects at HLRN The following table lists all currently active projects. The principal investigators are responsible for the short description...
ProjektBeschreibungFormaleAngaben Fragenkatalog zu Gro...
ProjektBeschreibungHinweise deutsch english Project Proposal and Application for Computing Time Required documents for a project application (initial, continuation, extension) For a project...
PubkeyLogin HLRN SSH Login Login to the HLRN using SSH keys To log in to HLRN machines, you need a validated SSH key. Password authentication is disabled! Table of Content...
Python Python Table of Content General Information License Python Versions and Module Files Integrated Python Extensions Separate Python Extensions...
QuickLinks deutsch english Quicklinks for Accounts and Projects Administrative and Organizational Tools and Forms All forms can be found on the Service Portal. See also...
RStat R The R package Table of Content General Information Usage of R at HLRN Citing and feedback General Information `R is a language and environment...
SamFS Archive File System / SAM FS Table of Content Archive file system and perm servers User commands available on the archive file system, description for Berlin...
ScaLAPACK ScaLAPACK Scalable Linear Algebra PACKage Table of Content General Information ScaLAPACK on HLRN Compile and run ScaLAPACK Programs on the <nop...
SgiIntelUserWorkshop HLRN SGI/Intel User Workshop 2008 Der HLRN veranstaltet zusammen mit den Firmen SGI und Intel einen Workshop zur Einf...
SimplifiedAggregation Simplified aggregation over the time dimension When running a numerical circulation model results are often stored in time slices distributed over many files. Ferret...
SmpCudaawareMPI CUDA Aware MPI implementations The documentation on this page is for the HLRN SMP nodes only! Table of Content General Information Available Versions...
SmpGnuCompiler GNU Compiler Collection The documentation on this page is for the HLRN SMP nodes only! Table of Content Available Versions Usage Hints Further Reading...
SmpHome The HLRN III SMP System How to program and use the DATA and POST nodes and the SMP cluster Table of Content General Information Intended Use User Documentation...
SmpIntelCompiler Intel Compilers The documentation on this page is for the HLRN SMP nodes only! Table of Content Available Versions Usage Hints Debugging Hints ...
SmpIntelMPI Intel MPI Intel`s MPI implementation The documentation on this page is for the HLRN SMP nodes only! Table of Content General Information Available Versions...
SmpMultipleInstances Running Multiple Instances in one Batch Job on SMP Nodes The documentation on this page is for the HLRN SMP nodes only! Table of Content General Information...
SmpMvapich2 MVAPICH2 An open source MPI implementation The documentation on this page is for the HLRN SMP nodes only! Table of Content General Information Available...
SmpNvidiaCUDA NVIDIA K40 cards in the SMP partition Table of Content NVIDIA K40 cards in the SMP partition Availability Access Availability The SMP partition...
SmpOpenACC OpenACC Programming on the HLRN SMP nodes The documentation on this page is for the HLRN SMP nodes only! Table of Content General Information Compile...
SmpOpenMPI OpenMPI An open source MPI implementation The documentation on this page is for the HLRN SMP nodes only! Table of Content General Information Available...
SmpPgiCompiler PGI Compiler The documentation on this page is for the HLRN SMP nodes only! Table of Content Available Versions Usage Hints General Hints Hints...
SmpTotalView TotalView A graphical, source level, multiprocess parallel debugger The documentation on this page is for the HLRN SMP nodes only! Table of Content General...
SpLASH SPLASH Visualisation tool for Smoothed Particle Hydrodynamics Table of Content General Information Usage of the SPLASH at HLRN General Information...
STAR-CCM STAR CCM A Package for Computational Fluid Dynamics Simulations Table of Content General Information Available Versions Functionality STAR CCM...
Status Status overview of the HLRN System
UDUNITS2 The Unidata UDUNITS2 Package Conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between...
UserAccountTools User Account Tools QuickLinks Wenn Sie bereits wissen, was Sie benötigen. Ausführliche Informationen und Verweise findet man HLRN Service Portal.
UserProjectServicePortal Service Portal: User, Project, and Allocation Management Options and Policies Preface The following important policies and information are of interest to...
UsingIO Using I/O Table of Content General Guidelines Using the Lustre File System Lustre Commands Performing Parallel I/O Using iobuf on the Cray...
VASP VASP The Vienna Ab initio Simulation Package Table of Content General Information Usage Conditions and Licensing at HLRN Usage of VASP at <nop...
WorkshopCraySeptember2013 HLRN Cray User Workshop Announcement `Cray XC30 User Workshop` On this page: Date and Place Overview Who Should Attend Details and Travel Information...


Created by WolfgangBaumann


This topic: Service > AtoZ
Topic revision: r13 - 2017-06-13 - WolfgangBaumann
 
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